Automatic Visualization Pipeline Formation for Medical Datasets on Grid Computing Environment
Commenced in January 2007
Frequency: Monthly
Edition: International
Paper Count: 32827
Automatic Visualization Pipeline Formation for Medical Datasets on Grid Computing Environment

Authors: Aboamama Atahar Ahmed, Muhammad Shafie Abd Latiff, Kamalrulnizam Abu Bakar, Zainul AhmadRajion

Abstract:

Distance visualization of large datasets often takes the direction of remote viewing and zooming techniques of stored static images. However, the continuous increase in the size of datasets and visualization operation causes insufficient performance with traditional desktop computers. Additionally, the visualization techniques such as Isosurface depend on the available resources of the running machine and the size of datasets. Moreover, the continuous demand for powerful computing powers and continuous increase in the size of datasets results an urgent need for a grid computing infrastructure. However, some issues arise in current grid such as resources availability at the client machines which are not sufficient enough to process large datasets. On top of that, different output devices and different network bandwidth between the visualization pipeline components often result output suitable for one machine and not suitable for another. In this paper we investigate how the grid services could be used to support remote visualization of large datasets and to break the constraint of physical co-location of the resources by applying the grid computing technologies. We show our grid enabled architecture to visualize large medical datasets (circa 5 million polygons) for remote interactive visualization on modest resources clients.

Keywords: Visualization, Grid computing, Medical datasets, visualization techniques, thin clients, Globus toolkit, VTK.

Digital Object Identifier (DOI): doi.org/10.5281/zenodo.1057079

Procedia APA BibTeX Chicago EndNote Harvard JSON MLA RIS XML ISO 690 PDF Downloads 1719

References:


[1] Bethel .W, Tierney. Brian, Lee. J, Gunter .D, Lau S (2000): Visapult Using High-Speed WANs and Network Data Caches to Enable Remote and Distributed Visualization, 2000 IEEE.
[2] Xiaoyu Zhang, Chandrajit Bajaj, William Blanke : 2001 Scalable Isosurface Visualization of Massive Datasets on COTS Clusters : Proceedings of the IEEE 2001 symposium on parallel and large-data visualization and graphics.
[3] Engel K Sommer .O, Ernst C, Ertl T. (2000): Remote 3D Visualization using Image- Streaming Techniques. 2000.
[4] Brett Beeson1,2, Mark Dwyer1, David 2005 : Server-side Visualization of Massive Datasets Thompson3 Proceedings of the First International Conference on e-Science and Grid Computing (e-Science-05).
[5] Foster, C. Kesselman, Nick .K. M., Tuecke .S (2002): The Physiology of the Grid: An Open Grid Services Architecture for Distributed Systems Integration. Technical report, Globus, February 2002.
[6] McCormick B. H., DeFanti T. A., Brown M. D. (1987), "Visualization in Scientific Computing", Computer Graphics 21 1-14.
[7] Haber, R.B. and McNabb, D.A. 1990. Visualization Idioms: A Conceptual Model for Scientific Visualization Systems. In: Visualization in Scientific Computing, Shriver, B., Neilson, G.M., and Rosenblum, L.J., Eds., IEEE Computer Society Press, 74-93.
[8] Upson, C., Faulhaber, T., Kamins, D., Schlegel, D., Laidlaw, D., Vroom, J., Gurwitz, R. and van Dam, A. 1989. The Application Visualization System: a Computational Environment for Scientific Visualization, IEEE Computer Graphics and Applications 9, 4, 30- 42.
[9] Will Schroeder, Ken Martin, and Bill Lorensen, The Visualization Toolkit: An Object-Oriented Approach To 3D Graphics. Second Edition. Prentice Hall. Upper Saddle River, NJ. 1998.
[10] SGI. SGI OpenGL VizServer 3.1. Data sheet, SGI, March 2003.
[11] Walton, J.P.R.B. (2004). NAG-s IRIS Explorer. In: Visualization Handbook, Johnson, C.R. and Hansen, C.D., Eds., Academic Press (in press). Available at http://www.nag.co.uk/doc/TechRep/Pdf/tr2_03.pdf
[12] Walker D. W. , Grimstead .I (2004): Resource aware visualization environment. http://www.wesc.ac.uk/projects/rave/.2004
[13] Wood. J, Brodlie, K., J. Walton. (2003) gViz - visualization and steering for the grid. In Proceedings of the UK All Hands Meeting 2003, http://www.nesc.ac.uk/events/ahm2003/AHMCD/pdf/030.pdf., http://www.visualization.leeds.ac.uk/gViz.
[14] Charters, S., Holliman, N.S. and Munro, M. 2003. Visualization in e- Demand: Grid Service Architecture for Stereoscopic Visualization, Proceedings of UK e-Science Second All Hands Meeting.
[15] Osborne .J, Wright .H, (2003) SuperVise: Using Grid Tools to Support Visualization. In Proceedings of the Fifth International Conference on Parallel Processing and Applied Mathematics (PPAM 2003).
[16] Mahovsky .J, Benedicenti. L (2003): Architecture for Java-Based Real- Time Distributed Visualization. IEEE Transactions on Visualization and Computer Graphics, 9(4):570 - 579, October December 2003.
[17] Allen .G, Benger. W, Goodale. T, Hege H.-C, Lanfermann . G , Merzky . A, Radke. T , Seidel .E, Shalf .J (2000): The Cactus Code: A Problem Solving Environment for the Grid. In Proceedings of the Ninth International Symposium on High Performance Distributed Computing (HPDC-00), pages 253-262. IEEE, August 2000.
[18] Engel K. et al.. (2000): Combining Local and Remote Visualization Techniques for Interactive Volume Rendering in Medical Applications. 2000.
[19] Lorensen, William and Harvey E. Cline. Marching Cubes: A High Resolution 3D Surface Construction Algorithm. Computer Graphics (SIGGRAPH 87 Proceedings) 21(4) July 1987, p. 163-170) http://www.cs.duke.edu/education/courses/fall01/cps124/resources/p163 -lorensen.pdf
[20] Ade J. Fewings and Nigel W. John, "Distributed Graphics Pipelines on the Grid," IEEE Distributed Systems Online, vol. 8, no. 1, 2007, art. no. 0701-o1001.
[21] Dutra, Rodrigues, Giraldi, Schulze, "Distributed Visualization Using VTK in Grid Environments," ccgrid, pp. 381-388, Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid '07), 2007.
[22] William J. Schroeder, Jonathan A. Zarge , William E. Lorensen, Decimation of triangle meshes, ACM SIGGRAPH Computer Graphics, v.26 n.2, p.65-70, July 1992.
[23] Thomas Sandholm and Jarek Gawor. Globus Toolkit 3 Core - A Grid Service Container Framework. Globus Toolkit 3 Core White Paper, July 2003.
[24] M. L. Massie, B. N. Chun, and D. E. Culler, The Ganglia Distributed Monitoring System: Design, Implementation, and Experience, Parallel Computing, Vol. 30, Issue 7, July, 2004.
[25] Ian Bowman 2004 Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment: available online http://vis.lbl.gov/Publications/2004/Bowman-PGV-LBNL-56977.pdf