Commenced in January 2007
Frequency: Monthly
Edition: International
Paper Count: 33122
A New Method for Rapid DNA Extraction from Artemia (Branchiopoda, Crustacea)
Authors: R. Manaffar, R. Maleki, S. Zare, N. Agh, S. Soltanian, B. Sehatnia, P. Sorgeloos, P. Bossier, G. Van Stappen
Abstract:
Artemia is one of the most conspicuous invertebrates associated with aquaculture. It can be considered as a model organism, offering numerous advantages for comprehensive and multidisciplinary studies using morphologic or molecular methods. Since DNA extraction is an important step of any molecular experiment, a new and a rapid method of DNA extraction from adult Artemia was described in this study. Besides, the efficiency of this technique was compared with two widely used alternative techniques, namely Chelex® 100 resin and SDS-chloroform methods. Data analysis revealed that the new method is the easiest and the most cost effective method among the other methods which allows a quick and efficient extraction of DNA from the adult animal.Keywords: APD, Artemia, DNA extraction, Molecularexperiments
Digital Object Identifier (DOI): doi.org/10.5281/zenodo.1058811
Procedia APA BibTeX Chicago EndNote Harvard JSON MLA RIS XML ISO 690 PDF Downloads 3197References:
[1] J. Dhont, P. Sorgeloos, Applications of Artemia. In: Abatzopoulos, T., Beardmore, J., Clegg, J., Sorgeloos, P. (Eds). Artemia: basic and applied biology. Kluwer Academic Publishers, Dordrecht, the Netherlands. 2002. 251-277.
[2] G. Gajardo, T.J. Abatzopoulos, I. Kappas, J. A. Beardmore, Chapter V. Evolution and speciation. In: Abatzopoulos, T.J., Beardmore, J.A., Clegg, J.S., Sorgeloos, P. (Eds).Artemia: basic and applied biology. Kluwer Academic Publishers, Dordrecht, the Netherlands. 2002. 225- 250.
[3] J.A. Moorad, M.S. Mayer, M.A. Simovich, Extraction of DNA from anostracan cysts (Crustacea, Branchiopoda) for use in RAPD-PCR analysis. Hydrobiologia. 1997.359: 159-162.
[4] P. Bossier, W. Xiaomei, F. Catania, F. Dooms, G. Van Stappen, E. Naessens, P. Sorgeloos, An RFLP database for authentication of commercial cyst samples of the brine shrimp Artemia spp. (International Study on Artemia LXX). Aquaculture. 2004. 231: 93-112.
[5] S. Yu, J. Geng, P. Zhou, J. Wang, X. Chen, J. Hu, New hydroxyapatite monolithic column for DNA extraction and its application in the purification of Bacillus subtilis crude lysate. Journal of Chromatography A. 2008. 1183: 29-37.
[6] C.W. Kan, C.P. Fredlake, E.A.S. Doherty, A.E. Barron, DNA sequencing and genotyping in miniaturized electrophoresis systems, Electrophoresis. 2004. 25, 3564-3588.
[7] H.L. Chang, Y.S. Moo, S.J. Kih, Y.E. Tae, L. Won, A chelating resin containing 4-(2-thiazolylazo) resorcinol as the functional group. Chromatographic application to the preconcentration and separation of some trace metal ions including uranium. Analytical chemistry. Acta. 1997. 57-63, 351.
[8] M. Kumar, D.P.S. Rathore, A.K. Singh, Pyrogallol immobilized Amberlite XAD-2: a newly designed collector for enrichment of metal ions prior to their determination by flame atomic absorption spectrometry. Microchim Acta. 2001. 137: 127.
[9] I. Singh, R. Saini, A highly selective photometric method for uranium (VI) using pyrimidyl azo dye in presence of EDTA. Talanta. 1994. 41: 2173-2175.
[10] D. F. Boltz, J. Edward, Jr. Havlena, The ultraviolet spectrophotometric determination of cadmium by the diethyldithiocarbamate method. Analytical chemistry. Acta. 1964. 30: 565-568.
[11] H.W. Chen, J.C. Jin, Y.F. Wang, Flow injection on-line coprecipitation preconcentration system using copper (II), Diethyl Dithiocarbamate as carrier for flame atomic absorption spectrometric determination of cadium, lead and nickel in environmental samples, Analytical chemistry. Acta. 1997. 353: pp. 181-188.
[12] S. Dadfarina, M. Talebi, A. M. Haji Shabani, Z. A. Beni, Determination of lead and cadmium in different samples by flow injection atomic obsorption spectrometry incorporating a microcolumn of immobilized ammonium pyrrolidine ditheiocarbamate on microcrystalline naphthalene, Croat. Chemistry . Acta. 2007. 80: 17-23.
[13] J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular cloning: A laboratory Manual, 2nd edition, cold spring Harbor Laboratory press, cold spring Harbor, New York. 1989.
[14] P. S. Walsh, D. A. Metzger, R. Higuchi, Chelex-100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques. 1991. 10: 506-513.
[15] A. Estoup, CR. Largiader, E. Perrot, D. Chourrout, Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Molecular Marine Biology and Biotechnology. 1996. 5: 295- 298.
[16] L. G. Davis, M. D. Dibner, J. F. Battey, Basic Methods in Molecular Biology. Elsevier Science Publishing Co., Inc., New York. 1986. 388 pp.
[17] A. Di Pinto, V. T. Forte, M. G. Guastadisegni, C. Martino, F. Schena, B. Tantillo, A comparison of DNA extraction methods for food analysis. Food Control. 2007. 18, 76-81.
[18] R. Boom, C. J. A. Sol, M. M. M. Salimans, C. L. Jansen, P. M. E. Wertheim-Van Dillen, J. Van der Noordaa, Rapid and simple method for purification of nucleic acids. Journal of Clinical Microbiology. 1990. 28: 495-503.
[19] L. Rudbeck, J. Dissing, Rapid, simple alkaline extraction of human genomic DNA from whole blood, buccal epithelial cells, semen and forensic stains for PCR. BioTechniques. 1998. 25: 588-592.
[20] G. E. Truett, P. Heeger, R. L. Mynatt, A. A. Truett, J. A. Walker, M. L. Warman, Preparation of PCR-quality mouse genomic DNA with hot sodium hydroxide and Tris (HotSHOT). BioTechniques. 2000. 29: 52- 54.
[21] Z. Xin, J.P. Velten, M. J. Oliver, J.J. Burke, High throughput DNA extraction method suitable for PCR. BioTechniques. 2003. 34: 820-826.
[22] J. Montero-Pau, A. G├│mez, J. Mu├▒oz, Applification of an inexpensive and high-throughput genomic DNA extraction method for the molecular ecology of zooplanktonic diapausing eggs. Limnology and Oceanography: Methods. 2008. 6: 218-222.
[23] L. De Meester, A. G├│mez, B. Okamura, K. Schwenk, Acta Oecol. The Monopolization Hypothesis and the dispersal-gene flow paradox in aquatic organisms. Acta Oecol. International Journal of Ecology. 2002. 23: 121-135.
[24] A. G├│mez, Molecular ecology of rotifers: from population differentiation to speciation. Hydrobiologia. 2005. 546: 83-99.
[25] S. Ishida, D. J. Taylor, Mature habitats associated with genetic divergence despite strong dispersal ability in an arthropod. BMC Evolutionary Biology. 2007. 7: 52.
[26] S. J. Adamowicz, A. Purvis, How many branchiopod crustacean species are there? Quantifying the componentsof underestimation. Global Ecology. Biogeogr. 2005. 14: 455-468.
[27] E. Kejnovsky, J. Kypr, DNA extraction by zinc. Nucleic Acids Research, Oxford University Press. 1997. Vol 25, Issue 9: 1870-1871.