Differentiation of Gene Expression Profiles Data for Liver and Kidney of Pigs
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Differentiation of Gene Expression Profiles Data for Liver and Kidney of Pigs

Authors: Khlopova N.S., Glazko V.I., Glazko T.T.

Abstract:

Using DNA microarrays the comparative analysis of a gene expression profiles is carried out in a liver and kidneys of pigs. The hypothesis of a cross hybridization of one probe with different cDNA sites of the same gene or different genes is checked up, and it is shown, that cross hybridization can be a source of essential errors at revealing of a key genes in organ-specific transcriptome. It is reveald that distinctions in profiles of a gene expression are well coordinated with function, morphology, biochemistry and histology of these organs.

Keywords: Microarray, gene expression profiles, key genes.

Digital Object Identifier (DOI): doi.org/10.5281/zenodo.1055749

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[1] Okoniewski M. J., Miller C. J. Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations//BMC Bioinformatics.- 2006. - Vol.7. - P.276-290.
[2] Stratil A, Peelman LJ, Mattheeuws M, Van Poucke M, Reiner G, Geldermann H. A novel porcine gene, alpha-1-antichymotrypsin 2 (SERPINA3-2): sequence, genomic organization, polymorphism and mapping// Gene. 2002 Jun 12;292(1-2):113-119).
[3] Mosesson MW. Fibrinogen and fibrin structure and functions.// J Thromb Haemost. 2005 Aug;3(8):1894-1904.
[4] Blair A , Ngo L , Park J , Paulsen IT , Saier MH Jr Phylogenetic analyses of the homologous transmembrane channel-forming proteins of the F0F1-ATPases of bacteria, chloroplasts and mitochondria.//Microbiology - 1996. - Vol.142, Pt 1. - P. 17-32.
[5] Huttner WB, Gerdes HH, Rosa P The granin (chromogranin/secretogranin) family.//Trends Biochem. Sci. - 1991. - Vol.16, N.1. - P. 27-30.
[6] Helle KB, Corti A, Metz-Boutigue MH, Tota B. The endocrine role for chromogranin A: a prohormone for peptides with regulatory properties//Cell Mol Life Sci. - 2007. - Vol.64, N.22., P. 2863-2886.
[7] Xu J, Zhang J, Wang L, Zhou J, Huang H, Wu J, Zhong Y, Shi Y. Solution structure of Urm1 and its implications for the origin of protein modifiers//Proc Natl Acad Sci U S A. - 2006. - Vol.103, N.31. - P.11625-11630.
[8] Nei M, Rogozin IB, Piontkivska H. Purifying selection and birth-anddeath evolution in the ubiquitin gene family//Proc Natl Acad Sci U S A. - 2000. - Vol. 97, N.20. - P.10866-10871.