rRNA Maturation Genes (KRR1 and PWP2) in Saccharomyces cerevisiae Inhibited by Silver Nanoparticles
Authors: Anjali Haloi, Debabrata Das
Abstract:
Silver nanoparticles inhibit a wide variety of microorganisms. The mechanism of inhibition is not entirely known although it is recognized to be concentration dependent and associated with the disruption of membrane permeability. Data on differential gene expression as a response to nanoparticles could provide insights into the mechanism of this inhibitory effect. Silver nanoparticles were synthesized in yeast growth media using a modification of the Creighton method and characterized with UV-Vis spectrophotometry, transmission electron microscopy (TEM), and X-ray diffraction (XRD). In yeasts grown in the presence of silver nanoparticles, we observed that at concentrations below the minimum inhibitory concentration (MIC) of 48.51 µg/ml, the total RNA content was steady while the cellular protein content declined rapidly. The analysis of the expression levels of KRR1 and PWP2, two important genes involved in rRNA maturation in yeasts, showed up to 258 and 42-fold decreases, respectively, compared to that of control samples. Whether silver nanoparticles have an adverse effect on ribosome assembly and function could be an area of further investigation.
Keywords: Ag NP, yeast, qRT-PCR, KRR1, PWP2.
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[1] H.H. Lara, E.N. Garza-Treviño, L. Ixtepan-Turrent, and D.K. Singh, “Silver nanoparticles are broad-spectrum bactericidal and virucidal compounds,” J Nanobiotechnol, vol. 9, Aug. 2011.
[2] I. Sondi, and B. Salopek-Sondi, “Silver nanoparticles as antimicrobial agent: A case study on E. coli as a model for Gram-negative bacteria,” J Colloid Interface Sci, vol. 275, no. 1, pp. 177-182, Jul. 2004.
[3] N.A. Amro, L.P. Kotra, K. Wadu-Mesthrige, A. Bulychev, S. Mobashery, and G. Liu, “High-resolution atomic force microscopy studies of the Escherichia coli outer membrane: structural basis for permeability,” Langmuir, vol. 16, no. 6, pp. 2789-2796, Jan. 2000.
[4] P.K. Stoimenov, R.L. Klinger, G.L. Marchin, and K.J. Klabunde, “Metal oxide nanoparticles as bactericidal agents,” Langmuir, vol. 18, no. 17, pp. 6679-6686, Jul. 2002.
[5] Q.L. Feng, J. Wu, G.Q. Chen, F.Z. Cui, T.M. Kim, and J.O. Kim, “A mechanistic study of the antibacterial effect of silver ions on Escherichia coli and Staphylococcus aureus,” J Biomed Mater Res, vo. 52, no. 4, pp. 662-668, Dec. 2000.
[6] J.R. Morones, J.L. Elechiguerra, A. Camacho, K. Holt, J.B. Kouri, J.T. Ramırez, and M.J. Yacaman, “The bactericidal effect of silver nanoparticles,” Nanotechnology, vol. 16, no. 10, pp. 2346-2353, Oct. 2005.
[7] S. Pal, Y.K. Tak, and J.M. Song, “Does the Antibacterial Activity of Silver Nanoparticles Depend on the Shape of the Nanoparticle? A Study of the Gram-Negative Bacterium Escherichia coli,” Appl Environ Microbiol, vol. 73, no. 6, pp. 1712-1720, Mar. 2007.
[8] H.J. Yen, S.H. Hsu, and C.L. Tsai, “Cytotoxicity and immunological response of gold and silver nanoparticles of different sizes,” Small, vol. 5, no. 13, pp. 1553-1561, Jul. 2009.
[9] J.P. Ruparelia, A.K. Chatterjee, S.P. Duttagupta, and S. Mukherji, “Strain specificity in antimicrobial activity of silver and copper nanoparticles,” Acta Biomater, vol. 4, no. 3, pp. 707-716, May 2008.
[10] J.S. Kim, E. Kuk, K.N. Yu, J.H. Kim, S.J. Park, H.J. Lee, S.H. Kim, Y.K. Park, Y.H. Park, C.Y. Hwang, Y.K. Kim, Y.S. Lee, D.H. Jeong, and M.H. Cho, “Antimicrobial effects of silver nanoparticles,” Nanomedicine, vol. 3, no. 1, pp. 95-101, Mar. 2007.
[11] H.H. Lara, N.V. Ayala-Nuñez, L. Ixtepan-Turrent, and C. Rodriguez-Padilla, “Bactericidal effect of silver nanoparticles against multidrug-resistant bacteria,” World J Microbiol Biotechnol, vol. 26, pp. 615-621, Apr. 2010.
[12] C.N. Lok, C.M. Ho, R. Chen, Q.Y. He, W.Y. Yu, H. Sun, P.K. Tam, J.F. Chiu, and C.M. Che, “Proteomic analysis of the mode of antibacterial action of silver nanoparticles,” J Proteome Res, vol. 5, no. 4, pp. 916-924, Mar. 2006.
[13] P. Dibrov, J. Dzioba, K.K. Gosink, and C.C. Hase, “Chemiosmotic mechanism of antimicrobial activity of Ag(+) in Vibrio cholerae,” Antimicrob Agents Chemother, vol. 46, no. 8, pp. 2668-2670, Aug. 2002.
[14] W.R. Li, X.B. Xie, Q.S. Shi, H.Y. Zeng, Y.S. Ou-Yang and Y.B. Chen, “Antibacterial activity and mechanism of silver nanoparticles on Escherichia coli,” Appl Microbiol Biotechnol, vol. 85, pp. 1115-1122, Jan. 2010.
[15] A.P. Gasch, P.T. Spellman, C.M. Kao, O. Carmel-Harel, M.B. Eisen, G. Storz, D. Botstein, and P.O. Brown, “Genomic expression programs in the response of yeast cells to environmental changes,” Mol Biol Cell, vol. 11, no. 12, pp. 4241-4257, Dec. 2000.
[16] M.J. Tamas, J. Labarre, M.B. Toledano, and R. Wysocki, “Mechanisms of toxic metal tolerance in yeast,” in Molecular biology of metal homeostasis and detoxification: from microbes to man, M.J. Tamás, and E. Martinoia, Eds. Heidelberg: Springer, 2005, pp. 395-454.
[17] C. Horstmann, C. Campbell, D.S. Kim, and K. Kim, “Transcriptome profile with 20 nm silver nanoparticles in yeast,” FEMS Yeast Res, vol. 19, no. 2, foz003, Mar. 2019.
[18] D. Das, and G.U. Ahmed, “Cellular Responses of Saccharomyces cerevisiae to silver nanoparticles,” Res J BioTechnol, vol. 8, no. 1, pp. 72-77, Jan. 2013.
[19] S.K. Gogoi, P. Gopinath, A. Paul, A. Ramesh, S.S. Ghosh, and A. Chattopadhyay, “Green Fluorescent Protein-Expressing Escherichia coli as a Model System for Investigating the Antimicrobial Activities of Silver Nanoparticles,” Langmuir, vol. 22, no. 22, pp. 9322-9328, Oct. 2006.
[20] S. Lee, J. Lee, K. Kim, S-J. Sim, M.B. Gu, J. Yi, and J. Lee, “Ecotoxicity of Commercial Silver Nanopowders to Bacterial and Yeast Strains,” Biotechnol Bioprocess Eng, vol. 14, pp. 490-495 Sep. 2009.
[21] S. Benthin, J. Nielsen, and J. Villadsen, “A simple and reliable method for the determination of cellular RNA content,” Biotechnol Tech, vol. 5, pp. 39-42, Jan. 1991.
[22] J. Lu, J.J. Bravo-Suárez, A. Takahashi, M. Haruta, and S.T. Oyama, “In situ UV–vis studies of the effect of particle size on the epoxidation of ethylene and propylene on supported silver catalysts with molecular oxygen,” J Catal, vol. 232, no. 1, pp. 85-95, May 2005.
[23] K.R. Brown, D.G. Walter, and M.J. Natan, “Seeding of Colloidal Au Nanoparticle Solutions. 2. Improved Control of Particle Size and Shape,” Chem Mater, vol. 12, no. 2, pp. 306-313, Feb. 2000.
[24] X. Wang, J. Zhuang, Q. Peng, and Y. Li, “A general strategy for nanocrystal synthesis,” Nature, vol. 437, pp. 121-124, Sep. 2005.
[25] A.S. Lanje, S.J. Sharma, and R.B. Pode, “Synthesis of silver nanoparticles: a safer alternative to conventional antimicrobial and antibacterial agents,” J Chem Pharm Res, vol. 2, no. 2, pp. 478-483, Mar. 2010.
[26] C. Liu, X. Yang, H. Yuan, Z. Zhou, and D. Xiao, “Preparation of Silver Nanoparticle and Its Application to the Determination of ct-DNA,” Sensors, vol. 7, no. 5, pp. 708-718, May 2007.
[27] X. Pan, I. Medina-Ramirez, R. Mernaugh, and J. Liu, “Nanocharacterization and bactericidal performance of silver modified titania photocatalyst,” Colloids Surf B, vol. 77, no. 1, pp. 82-89, May 2010.
[28] A. Panacek, M. Kolar, R. Vecerova, R. Prucek, J. Soukupova, V. Krystof, P. Hamal, R. Zboril, and L.Kvıtek, “Antifungal activity of silver nanoparticles against Candida spp.,” Biomaterials, vol. 30, no. 31, pp. 6333-63340, Oct. 2009.
[29] A. Nasrollahi, K. Pourshamsian, and P. Mansourkiaee, “Antifungal activity of silver nanoparticles on some of fungi,” Int J Nano Dimens, vol. 1, no. 3, pp. 233-239, Winter 2011
[30] V.J. Higgins, P.J. Bell, I.W. Dawes, and P.V. Attfield, “Generation of a Novel Saccharomyces cerevisiae Strain That Exhibits Strong Maltose Utilization and Hyperosmotic Resistance Using Nonrecombinant Techniques,” Appl Environ Microbiol, vol. 67, no. 9, pp. 4346-4348, Sep. 2001.
[31] U. Bond, “Stressed out! Effects of environmental stress on mRNA metabolism,” FEMS Yeast Res, vol. 6, no. 2, pp. 160-170, Mar. 2006.
[32] Y.H. Jin, P.E. Dunlap, S.J. McBride, H. Al-Refai, P.R. Bushel, and J.H. Freedman, “Global transcriptome and deletome profiles of yeast exposed to transition metals,” PLoS Genet, vol. 4, no. 4, pp. e1000053, Apr. 2008.
[33] J.H. Niazi, B-I. Sang, Y.S. Kim, and M.B. Gu, “Global Gene Response in Saccharomyces cerevisiae Exposed to Silver Nanoparticles,” Appl Biochem Biotechnol, vol. 164, pp. 1278-1291, Mar. 2011.
[34] M.J. Miller, N.H. Xuong, and E.P. Geiduschek, “Quantitative analysis of the heat shock response of Saccharomyces cerevisiae,” J Bacteriol, vol. 151, no. 1, pp. 311-327, Jul. 1982.
[35] T. Moss, “At the crossroads of growth control; making ribosomal RNA,” Curr Opin Genet Dev, vol. 14, no. 2, pp. 210-217, Apr. 2004.