Graph Cuts Segmentation Approach Using a Patch-Based Similarity Measure Applied for Interactive CT Lung Image Segmentation
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Graph Cuts Segmentation Approach Using a Patch-Based Similarity Measure Applied for Interactive CT Lung Image Segmentation

Authors: Aicha Majda, Abdelhamid El Hassani

Abstract:

Lung CT image segmentation is a prerequisite in lung CT image analysis. Most of the conventional methods need a post-processing to deal with the abnormal lung CT scans such as lung nodules or other lesions. The simplest similarity measure in the standard Graph Cuts Algorithm consists of directly comparing the pixel values of the two neighboring regions, which is not accurate because this kind of metrics is extremely sensitive to minor transformations such as noise or other artifacts problems. In this work, we propose an improved version of the standard graph cuts algorithm based on the Patch-Based similarity metric. The boundary penalty term in the graph cut algorithm is defined Based on Patch-Based similarity measurement instead of the simple intensity measurement in the standard method. The weights between each pixel and its neighboring pixels are Based on the obtained new term. The graph is then created using theses weights between its nodes. Finally, the segmentation is completed with the minimum cut/Max-Flow algorithm. Experimental results show that the proposed method is very accurate and efficient, and can directly provide explicit lung regions without any post-processing operations compared to the standard method.

Keywords: Graph cuts, lung CT scan, lung parenchyma segmentation, patch based similarity metric.

Digital Object Identifier (DOI): doi.org/10.5281/zenodo.1317340

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[1] C. A. Ridge, A. M. McErlean, and M. S. Ginsberg, “Epidemiology of lung cancer,” in Seminars in interventional radiology, vol. 30, pp. 093–098, Thieme Medical Publishers, 2013.
[2] C. E. DeSantis, C. C. Lin, A. B. Mariotto, R. L. Siegel, K. D. Stein, J. L. Kramer, R. Alteri, A. S. Robbins, and A. Jemal, “Cancer treatment and survivorship statistics, 2014,” CA: a cancer journal for clinicians, vol. 64, no. 4, pp. 252–271, 2014.
[3] L. Tsochatzidis, K. Zagoris, N. Arikidis, A. Karahaliou, L. Costaridou, and I. Pratikakis, “Computer-aided diagnosis of mammographic masses based on a supervised content-based image retrieval approach,” Pattern Recognition, 2017.
[4] J. won Cha, M. M. Farhangi, N. Dunlap, and A. Amini, “Volumetric analysis of respiratory gated whole lung and liver ct data with motion-constrained graph cuts segmentation,” in Engineering in Medicine and Biology Society (EMBC), 2017 39th Annual International Conference of the IEEE, pp. 3405–3408, IEEE, 2017.
[5] W. Zhang, X. Wang, P. Zhang, and J. Chen, “Global optimal hybrid geometric active contour for automated lung segmentation on ct images,” Computers in biology and medicine, vol. 91, pp. 168–180, 2017.
[6] P. P. Rebouc¸as Filho, P. C. Cortez, A. C. da Silva Barros, V. H. C. Albuquerque, and J. M. R. Tavares, “Novel and powerful 3d adaptive crisp active contour method applied in the segmentation of ct lung images,” Medical image analysis, vol. 35, pp. 503–516, 2017.
[7] I. Sluimer, A. Schilham, M. Prokop, and B. van Ginneken, “Computer analysis of computed tomography scans of the lung: a survey,” IEEE transactions on medical imaging, vol. 25, no. 4, pp. 385–405, 2006.
[8] S. Hu, E. A. Hoffman, and J. M. Reinhardt, “Automatic lung segmentation for accurate quantitation of volumetric x-ray ct images,” IEEE transactions on medical imaging, vol. 20, no. 6, pp. 490–498, 2001.
[9] S. G. Armato and W. F. Sensakovic, “Automated lung segmentation for thoracic ct: Impact on computer-aided diagnosis1,” Academic Radiology, vol. 11, no. 9, pp. 1011–1021, 2004.
[10] D. Mahapatra, “Semi-supervised learning and graph cuts for consensus based medical image segmentation,” Pattern Recognition, vol. 63, pp. 700–709, 2017.
[11] W. Sun, X. Huang, T.-L. B. Tseng, and W. Qian, “Automatic lung nodule graph cuts segmentation with deep learning false positive reduction,” in SPIE Medical Imaging, pp. 101343M–101343M, International Society for Optics and Photonics, 2017.
[12] Y. Y. Boykov and M.-P. Jolly, “Interactive graph cuts for optimal boundary & region segmentation of objects in nd images,” in Computer Vision, 2001. ICCV 2001. Proceedings. Eighth IEEE International Conference on, vol. 1, pp. 105–112, IEEE, 2001.
[13] C. Rother, V. Kolmogorov, and A. Blake, “Grabcut: Interactive foreground extraction using iterated graph cuts,” in ACM transactions on graphics (TOG), vol. 23, pp. 309–314, ACM, 2004.
[14] S. Vicente, V. Kolmogorov, and C. Rother, “Graph cut based image segmentation with connectivity priors,” in Computer vision and pattern recognition, 2008. CVPR 2008. IEEE conference on, pp. 1–8, IEEE, 2008.
[15] K. Nakagomi, A. Shimizu, H. Kobatake, M. Yakami, K. Fujimoto, and K. Togashi, “Multi-shape graph cuts with neighbor prior constraints and its application to lung segmentation from a chest ct volume,” Medical image analysis, vol. 17, no. 1, pp. 62–77, 2013.
[16] S. Dai, K. Lu, J. Dong, Y. Zhang, and Y. Chen, “A novel approach of lung segmentation on chest ct images using graph cuts,” Neurocomputing, vol. 168, pp. 799–807, 2015.
[17] S. G. Armato, G. McLennan, L. Bidaut, M. F. McNitt-Gray, C. R. Meyer, A. P. Reeves, B. Zhao, D. R. Aberle, C. I. Henschke, E. A. Hoffman, et al., “The lung image database consortium (lidc) and image database resource initiative (idri): a completed reference database of lung nodules on ct scans,” Medical physics, vol. 38, no. 2, pp. 915–931, 2011.
[18] B. N. Narayanan, R. C. Hardie, T. M. Kebede, and M. J. Sprague, “Optimized feature selection-based clustering approach for computer-aided detection of lung nodules in different modalities,” Pattern Analysis and Applications, pp. 1–13, 2017.
[19] A. Buades, B. Coll, and J.-M. Morel, “A review of image denoising algorithms, with a new one,” Multiscale Modeling & Simulation, vol. 4, no. 2, pp. 490–530, 2005.
[20] H. Jomaa, R. Mabrouk, N. Khlifa, and F. Morain-Nicolier, “Denoising of dynamic pet images using a multi-scale transform and non-local means filter,” Biomedical Signal Processing and Control, vol. 41, pp. 69–80, 2018.
[21] A. El Hassani and A. Majda, “Efficient image denoising method based on mathematical morphology reconstruction and the non-local means filter for the mri of the head,” in Information Science and Technology (CiSt), 2016 4th IEEE International Colloquium on, pp. 422–427, IEEE, 2016.
[22] N. Deo, Graph theory with applications to engineering and computer science. Courier Dover Publications, 2017.
[23] H. Lin, C. Huang, W. Wang, J. Luo, X. Yang, and Y. Liu, “Measuring interobserver disagreement in rating diagnostic characteristics of pulmonary nodule using the lung imaging database consortium and image database resource initiative,” Academic Radiology, vol. 24, no. 4, pp. 401–410, 2017.
[24] S. Jeevakala et al., “Sharpening enhancement technique for mr images to enhance the segmentation,” Biomedical Signal Processing and Control, vol. 41, pp. 21–30, 2018.