Burst on Hurst Algorithm for Detecting Activity Patterns in Networks of Cortical Neurons
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Burst on Hurst Algorithm for Detecting Activity Patterns in Networks of Cortical Neurons

Authors: G. Stillo, L. Bonzano, M. Chiappalone, A. Vato, F. Davide, S. Martinoia

Abstract:

Electrophysiological signals were recorded from primary cultures of dissociated rat cortical neurons coupled to Micro-Electrode Arrays (MEAs). The neuronal discharge patterns may change under varying physiological and pathological conditions. For this reason, we developed a new burst detection method able to identify bursts with peculiar features in different experimental conditions (i.e. spontaneous activity and under the effect of specific drugs). The main feature of our algorithm (i.e. Burst On Hurst), based on the auto-similarity or fractal property of the recorded signal, is the independence from the chosen spike detection method since it works directly on the raw data.

Keywords: Burst detection, cortical neuronal networks, Micro-Electrode Array (MEA), wavelets.

Digital Object Identifier (DOI): doi.org/10.5281/zenodo.1060721

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[1] V. Sanguineti, M. Giugliano, M. Grattarola, and P. Morasso,"Neuro-Engineering: from neural interfaces to biological computers," in Communications through Virtual Technologies, G. Riva and F. A. Davide, Eds. Amsterdam: IOS Press, 2001, pp. 233-246.
[2] Y. Kaneoke and J. L. Vitek, "Bursts and oscillation as disparate neuronal properties," J. Neurosci. Methods, vol. 68, pp. 211-223,1996.
[3] E. W. Keefer, Gramowski, and G. W. Gross, "NMDA receptor-dependent periodic oscillations in cultured spinal cord networks," Journal of Neurophysiology, vol. 86, pp. 3030-3042, 2001.
[4] G. W. Gross, H. M. E. Azzazy, M. C. Wu, and B. K. Rhodes, "The use of neuronal networks on multielectrode arrays as biosensors," Biosensors & Bioelectronics, vol. 10, pp. 553-567, 1995.
[5] D. Jabaudon, K. Shimamoto, Y. Yasuda-Kamatani, M. Scanziani,B. H. Gähwiler, and U. Gerber, "Inhibition of uptake unmasksrapid extracellular turnover of glutamate of nonvesicular origin,"Neurobiology, vol. 96, pp. 8733-8738, 1999.
[6] N. Nakamichi, H. Ohno, Y. Nakamura, T. Hirai, K. Kuramoto, and Y. Yoneda, "Blockade by ferrous iron of Ca2+ influx through N-methyl-D aspartate receptor channels in immature cultured rat cortical neurons," Journal of Neurochemistry, vol. 83, pp. 1-11,2002.
[7] S. Mennerick, W. Shen, W. Xu, A. Benz, K. Tanaka, K. Shimamoto, K. E. Isenberg, J. E. Krause, and C. F. Zorumski,"Substrate turnover by transporters curtails synaptic glutamate transients," J Neurosci, vol. 19, pp. 9242-9251, 1999.
[8] J.H. Cocater-Zilgien and F. Delcomyn, "Identification of bursts in spike trains", J. Neurosci. Methods, vol. 41, pp.19-30, 1992.
[9] Abry P.,Veitch D. ''Wavelet analysis of long-range-dependen ttraffic'' 2 IEEE transactions on information theory, vol. 44, 1,1998.